Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015931412.1_cds_XP_016478242.1_69902
CDS Infomation

[gene=LOC107799613] [db_xref=GeneID:107799613] [protein=pentatricopeptide repeat-containing protein At2g42920, chloroplastic] [protein_id=XP_016478242.1] [location=complement(62116..63693)] [gbkey=CDS]
Sequence

ATGCCATCATATTTTTGCTCATACAATCCATCACCAACTTCCATTTCAAAATTCATTTCA
GACCAACCATATCTTTACCTGCTAGAAACCAAATGTAAAACCATAACAGACCTAAAAAAA
ATTCATGCCCAACTCATAAAAACTGGTCTAATTAAGGACAAAATAGCATCTAGCCGTGTC
CTAGCATTTTCGGCCAAGTTCCCTACTGGTGACATCAATTATGCAAACATGGTTTTCACT
CAAATAGACAATCCAAATCTTTTTATTTGGAATACCATGATTAGAGGTTTCTCAGAGAGT
TCAACTCCACAATATGCAATTCATCTCTTCATTGAAATGTTAACCACTTCAGATATTCAA
CCACAATTACTTACTTATCCATCAGTTTTTAAGGCCTATACTAGACTTGGTCTTGCCAAC
AGTGGAACTCAACTTCATGGGAGAATCATCAAACTAGGCCTAGAATTCGACACATTCATA
AGGAATACTATGTTACATATGTATGCAAGTTGTGGATTTTTGATTGAAGCAAGGAAATTG
TTCGACGAGGATGAGGACGAGGACGTTGTTGCTTGGAATTCTTTGATCATTGGAATAGCG
AAATCTGGGGATATCGACGAATCTTGGAGGTTATTTAGTAAAATGGAAACTAGAAATGAT
GTATCTTGGAACAGTATGATAAGTGGTTTTGTTAGAAATGGTAACTGGATTGAAGCATTG
AACCTTTTCAACGCAATGCAAGAGGAAAAAATTAAGCCTAGTGAATTCACACTTGTGAGC
TTGTTGAATGCTTGTGGACACTTAGGAGCACTTGAACAAGGGAATTGGATTTATAATTAT
GTTAAAAGGAACAATGTTAAGTTGAATGTCATTGTTGTTACAGCAATTATAGACATGTAT
TGTAAGTGTGCAAACGTTGAAATGGCGTGGCAAGTTTTTGAGAGTGCTCCGAATAAAGGG
TTATCATCTTGGAACTCTATGATTTTGGGCTTAGGAACTAATGGATTTGAGGATGAAGCG
ATTCAGCTATTCTCGAGGCTACAATGCTCGAATCTGAAGCCGGATTCTGTGAGTTTTATA
GGTGTACTAACTGCATGCAATCACTCAGGATTAGTAGATAAAGCAAAATACTATTTCCAA
TTAATGAAAGAAGAATATGGTATCGCGCCACCAATTAAGCACTATGGTTGTATGGTCGAT
ATTTTGGGCCGAGCAGGACTACTTGAAGAAGCAGAAGAGATTATAAGAAGTATGAATATA
GAACCTGATGCTGTTATATGGGGTTCTTTGTTATCAGCTTGTAGGAGTCACGGAAACATG
GCGTTGGCGAGATGGTCAGCTCAGCATTTGCTTGAGTTGGATCCAAATGAGAGCAGTGGT
TATGTATTGATGGCGAATATGTATGCAGCCAATGGACACTTTGAAAAAGCTATGGACGAA
AGAATTTCAATGAAGGAGAAACAGATAGAGAAAGAACCAGGATGTAGTTCAGTAGAAGTT
AATGGAGAAGTTCATGAGTTTGTTTCTGGTAGGAAGTTAGATTCTCAGTTCCATGATTTA
TATTCTTTAATGCACTAG

Peptide Sequence

PEP ID

XP_016478242.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Nicotiana tabacum]
Sequence

MPSYFCSYNPSPTSISKFISDQPYLYLLETKCKTITDLKKIHAQLIKTGLIKDKIASSRV
LAFSAKFPTGDINYANMVFTQIDNPNLFIWNTMIRGFSESSTPQYAIHLFIEMLTTSDIQ
PQLLTYPSVFKAYTRLGLANSGTQLHGRIIKLGLEFDTFIRNTMLHMYASCGFLIEARKL
FDEDEDEDVVAWNSLIIGIAKSGDIDESWRLFSKMETRNDVSWNSMISGFVRNGNWIEAL
NLFNAMQEEKIKPSEFTLVSLLNACGHLGALEQGNWIYNYVKRNNVKLNVIVVTAIIDMY
CKCANVEMAWQVFESAPNKGLSSWNSMILGLGTNGFEDEAIQLFSRLQCSNLKPDSVSFI
GVLTACNHSGLVDKAKYYFQLMKEEYGIAPPIKHYGCMVDILGRAGLLEEAEEIIRSMNI
EPDAVIWGSLLSACRSHGNMALARWSAQHLLELDPNESSGYVLMANMYAANGHFEKAMDE
RISMKEKQIEKEPGCSSVEVNGEVHEFVSGRKLDSQFHDLYSLMH

Transcript Sequence

Gene sequence data has not been registered.